In [1]:
import os
os.environ["SAS_OPENCL"] = "cuda"   # use CUDA GPU backend for sasmodels

import escape as esc
import numpy as np
esc.require("0.9.8")
Loading material database from C:\dev\escape-core\python\src\escape\scattering\..\data\mdb\materials.db

SAXS. Form-factors. Lamellar (SasView-aligned)¶

Lyotropic lamellar phase: dilute, randomly oriented, infinitely large sheets with uniform SLD contrast. Matches lamellar — SasView 6.1.3.

Reference: https://www.sasview.org/docs/user/models/lamellar.html

Parameters (SasView defaults)¶

Parameter Variable Value
Scale (volume fraction of sheet) scale 1
Background (cm⁻¹) background 0.001
Layer thickness δ (Å) thickness 50
Contrast Δρ (10⁻⁶ Å⁻²) contrast 5 (= sld 1 − sld_solvent 6)

Form-factor¶

$$P(q) = \frac{4(\Delta\rho)^2}{q^2}\sin^2\!\left(\frac{q\delta}{2}\right)$$

$$I(q) = \frac{\mathrm{scale}\cdot 2\pi\cdot P(q)}{q^2\delta} + \mathrm{background}$$

The model is isotropic: 2D uses $q = \sqrt{q_x^2+q_y^2}$.

In [2]:
# ── Variables ──────────────────────────────────────────────────────────────
q = esc.var("Q")

# ── Parameters ─────────────────────────────────────────────────────────────
scale      = esc.par("Scale",      1.0,   scale=1e8, fixed=True)
thickness  = esc.par("Thickness", 50.0,   units=esc.angstr)
contrast   = esc.par("Contrast",   5.0,   scale=1e-6, units=f"{esc.angstr}^-2")
background = esc.par("Background", 0.001, userlim=[0.0, 0.03])

# ── Form factor ────────────────────────────────────────────────────────────
P_q = 4.0 * esc.pow(contrast, 2) / esc.pow(q, 2) * esc.pow(esc.sin(0.5 * q * thickness), 2)

i1d = scale * 2.0 * np.pi * P_q / (esc.pow(q, 2) * thickness) + background
In [3]:
i1d.device = "gpu"

qs = np.linspace(0.01, 1.0, 300)
i1d.show(coordinates=qs).config(
    title="Lamellar — 1D",
    xlog=True, ylog=True,
    xlabel=f"Q [{esc.angstr}^-1]", ylabel="I(q) [cm^-1]")
Out[3]:

2D isotropic scattering (qx, qy)¶

The model is isotropic. The 2D intensity is the same as 1D with $q = \sqrt{q_x^2+q_y^2}$.

In [4]:
qx = esc.var("qx")
qy = esc.var("qy")
q2d = esc.sqrt(esc.pow(qx, 2) + esc.pow(qy, 2))

P_2d = 4.0 * esc.pow(contrast, 2) / esc.pow(q2d, 2) * esc.pow(esc.sin(0.5 * q2d * thickness), 2)
i2d  = scale * 2.0 * np.pi * P_2d / (esc.pow(q2d, 2) * thickness) + background

i2d.device = "gpu"

xs = np.linspace(-1.0, 1.0, 300); ys = np.linspace(-1.0, 1.0, 300)
xv, yv = np.meshgrid(xs, ys)
coords_2d = np.column_stack([xv.flatten(), yv.flatten()]).flatten()
i2d.show(coordinates=coords_2d).config(
    title="Lamellar — isotropic 2D (qx, qy)",
    xlabel=f"qx [{esc.angstr}^-1]", ylabel=f"qy [{esc.angstr}^-1]",
    cblog=True, colorscale="jet")
Out[4]:

SasView reference model & comparison¶

ESCAPE parameter SasView parameter Notes
contrast * 1e-6 sld - sld_solvent contrast in Å⁻²
thickness thickness total layer thickness δ (Å)
In [5]:
import time
import matplotlib.pyplot as plt
from sasmodels.core import load_model
from sasmodels.data import empty_data1D
from sasmodels.direct_model import DirectModel

qs = np.linspace(0.01, 1.0, 300).copy()

kernel = load_model("lamellar")
f_sas  = DirectModel(empty_data1D(qs), kernel)
sas_pars = dict(scale=1.0, background=0.001, sld=1.0, sld_solvent=6.0, thickness=50.0)

f_sas(**sas_pars)
i1d.device = "gpu"; i1d(qs[:5])

def timeit(fn, n=5):
    t0 = time.perf_counter()
    for _ in range(n): result = fn()
    return (time.perf_counter() - t0) / n * 1e3, result

t_sas, Iq_sas = timeit(lambda: f_sas(**sas_pars))

i1d.device = "gpu"
t_gpu, Iq_gpu = timeit(lambda: i1d(qs), n=3)
i1d.device = "cpu"
t_cpu, Iq_cpu = timeit(lambda: i1d(qs))
i1d.device = "gpu"

print(f"SASView GPU : {t_sas:.0f} ms")
print(f"ESCAPE GPU  : {t_gpu:.0f} ms")
print(f"ESCAPE CPU  : {t_cpu:.0f} ms  ({len(qs)} q-pts)")
rel = np.max(np.abs((Iq_gpu - Iq_sas) / Iq_sas)) * 100
print(f"Max relative diff vs SasView: {rel:.2f}%")

esc.overlay(Iq_sas, Iq_gpu, Iq_cpu, coordinates=qs).config(
    xlabel="Q (1/A)", ylabel="I(q) (1/cm)",
    xlog=True, ylog=True,
    fig_title=f"Lamellar I(q) — {len(qs)} pts",
    labels=["SASView", "ESCAPE GPU", "ESCAPE CPU"],
    line_styles=["solid", "dash", "dot"],
    line_widths=[2, 3, 3]
)
SASView GPU : 10 ms
ESCAPE GPU  : 0 ms
ESCAPE CPU  : 1 ms  (300 q-pts)
Max relative diff vs SasView: 0.00%
C:\Users\User\AppData\Local\Temp\ipykernel_63068\3877553648.py:14: UserWarning:

Input array does not own its data (e.g. it is a view or slice); data will be copied

Out[5]:
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